Sherlock changelog

Sherlock changelog

www.sherlock.stanford.edu

Introducing Boltz-1 on Sherlock

by Kilian Cavalotti, Technical Lead & Architect, HPC
Software
We're pleased to announce the availability of Boltz-1, a new open-source molecular interactions AI model recently released by MIT.
Introducing Boltz-1 on Sherlock

Storage quota units change: TB to TiB

by Kilian Cavalotti, Technical Lead & Architect, HPC
Following in Oak footsteps, we’re excited to announce that Sherlock is adopting a new unit of measure for file system quotas. Starting today, we're transitioning from Terabytes (TB) to Tebibytes (TiB) for all storage allocations on
Improvement
Data

Sherlock goes full flash

by Stéphane Thiell & Kilian Cavalotti, Research Computing Team
Data
Hardware
Improvement
What could be more frustrating than anxiously waiting for your computing job to finish? Slow I/O that makes it take even longer is certainly high on the list. But not anymore! Fir, Sherlock’s scratch file system, has just undergone a major
Sherlock goes full flash

A new tool to help optimize job resource requirements

by Kilian Cavalotti, Technical Lead & Architect, HPC
It’s not always easy to determine the right amount of resources to request for a computing job. Making sure that the application will have enough resources to run properly, but avoiding over-requests that would make the jobs spend too much
Documentation
Scheduler
Improvement

ClusterShell on Sherlock

by Kilian Cavalotti, Technical Lead & Architect, HPC
Software
New
Ever wondered how your jobs were doing while they were running? Keeping a eye on a log file is nice, but what if you could quickly gather process lists, usage metrics and other data points from all the nodes your multi-node jobs are running
ClusterShell on Sherlock

Keep up to date with software updates

by Kilian Cavalotti, Technical Lead & Architect, HPC
To help users stay on top of software changes on Sherlock, we’ve recently introduced a new software updates RSS feed. It’s available from the Sherlock software list page, and you can directly add it to your RSS reader of choice. And if
Software
Update

Tracking NFS problems down to the SFP level

by Kilian Cavalotti
Blog
Data
Hardware
When NFS problems turn out to be... not NFS problems at all.
Tracking NFS problems down to the SFP level

Sherlock facts

by Kilian Cavalotti
Data
Improvement
Ever wondered how many compute nodes is Sherlock made of? Or how many users are using it? Or how many Infiniband cables link it all together? Well, wonder no more: head to the Sherlock facts page and see for yourself! > hint: there are...
Sherlock facts

Sherlock is hard at work against COVID-19

by Kilian Cavalotti
About a month ago, we announced that we were dedicating a portion of Sherlock's computing resources to research projects around COVID-19. Since then, more than 15 PIs and research groups have reached out to share their projects, and...
Blog