Sherlock changelog

You can now subscribe to Sherlock news and updates

by Kilian Cavalotti
You can now subscribe to Sherlock news and updates, and automatically receive an email notification when a new post is published here. To subscribe to Sherlock updates, follow the steps below: go to https://news.sherlock.stanford.edu...
Improvement
Update

Sherlock now welcomes lab-contributed software

by Kilian Cavalotti
Have you ever spent hours compiling and tuning software, put together a complex workflow combining multiple software parts, or just installed the latest version of the brand new software tools you're developing on Sherlock? And wondered...
Software
Announce
New

MySQL on Sherlock

by Kilian Cavalotti
Have you ever wondered how you could use a database server on Sherlock? Or wanted to run jobs that query data from a SQL database? Or even better, multiple jobs that would interact with the same database? Have you ever wanted to store...
Improvement
Software
Documentation

Spark on Sherlock

by Kilian Cavalotti
Apache Spark is now available on Sherlock, via the spark module: $ ml spark We also added some new documentation and example job scripts, so if you ever needed to run Spark jobs on Sherlock, please take a look at those and let us know...
Improvement
Documentation
Software

Tensorflow 1.7.0 now available

by Sherlock Team
Tensorflow 1.7.0, which features TensorRT integration, is now available on Sherlock 2.0. You can load it on Sherlock with: $ ml py-tensorflow/1.7.0_py27 > NB: As with all the other Tensorflow modules on Sherlock, Tensorflow 1.7.0...
Software
Update

Sherlock 2.0 limits increased

by Sherlock Team
We started migrating compute nodes from Sherlock 1.0 to Sherlock 2.0, as part of the 2nd phase of the transition process described in the Sherlock 2.0 transition guide. That means that more nodes are now available on Sherlock 2.0, in...
Update

New software modules

by Sherlock Team
If you haven't checked in a while, we're continuing to add more software modules on Sherlock 2.0. Among many others, the following additions will be of particular interest to the bioinformatics and genomics communities: star cufflinks...
Software
New

Slurm version update

by Sherlock Team
Slurm has been updated to version 17.02.7. Full changelog is available here
Update

Slurm update

by Sherlock Team
Slurm has been updated to version 17.02.5. The full changelog is available here. Of particular interest is a fix for a problem that affected users submitting jobs to multiple partitions on Sherlock 2.0, and who could receive errors...
Update