Sherlock changelog

Better error messages when submitting jobs

by Kilian Cavalotti
Sherlock now offers a better and more complete explanation when a job submission is rejected by the scheduler. What does it look like? In the most common cases, jobs that don't meet the requirements for the partition they're submitted...
Improvement
Scheduler

You can now subscribe to Sherlock news and updates

by Kilian Cavalotti
You can now subscribe to Sherlock news and updates, and automatically receive an email notification when a new post is published here. To subscribe to Sherlock updates, follow the steps below: go to https://news.sherlock.stanford.edu...
Improvement
Update

High priority QOS for owners

by Kilian Cavalotti
Today, we're introducing a new high-priority QOS for owner partitions. In groups which have purchased their own compute nodes on Sherlock, users can now submit jobs to their group partition using the --qos=high_p option: it will give...
Improvement
Scheduler

Sherlock now welcomes lab-contributed software

by Kilian Cavalotti
Have you ever spent hours compiling and tuning software, put together a complex workflow combining multiple software parts, or just installed the latest version of the brand new software tools you're developing on Sherlock? And wondered...
Software
Announce
New

MySQL on Sherlock

by Kilian Cavalotti
Have you ever wondered how you could use a database server on Sherlock? Or wanted to run jobs that query data from a SQL database? Or even better, multiple jobs that would interact with the same database? Have you ever wanted to store...
Improvement
Software
Documentation

Spark on Sherlock

by Kilian Cavalotti
Apache Spark is now available on Sherlock, via the spark module: $ ml spark We also added some new documentation and example job scripts, so if you ever needed to run Spark jobs on Sherlock, please take a look at those and let us know...
Improvement
Documentation
Software

Sherlock welcomes Volta

by Sherlock Team
The Sherlock 2.0 cluster now features the latest generation of GPU accelerators: the NVIDIA Tesla V100. Each V100 GPU features 7.8 TFlops of double-precision (FP64) performance, up to 125 TFlops for deep-learning applications, 16GB of...
New
Hardware

New software modules

by Sherlock Team
If you haven't checked in a while, we're continuing to add more software modules on Sherlock 2.0. Among many others, the following additions will be of particular interest to the bioinformatics and genomics communities: star cufflinks...
Software
New

GPU compute modes

by Sherlock Team
We developed a new extension to allow users to change the compute mode of the GPUs allocated to their jobs. By default, GPUs are set in the "Exclusive Process" mode for best performance and ensure that only one process can use the GPU...
Improvement
New