Sherlock changelog

Persistent processes on Sherlock

by Kilian Cavalotti
There are many cases where having a persistent process (or service) running alongside computing jobs is of great benefit. For instance, when data is stored in a database format to allow for highly efficient queries, jobs that want to...
Scheduler
Documentation

Running containers on Sherlock

by Kilian Cavalotti
Documentation
Software
Have you ever wanted to run Docker containers on Sherlock, and skip the hassle of figuring out your application dependencies, installing them, compiling the code, resolving compilation errors, finding missing libraries, or making sure...

Hours announced for the SRCF shutdown

by Kilian Cavalotti
Announce
Maintenance
As previously announced, the Stanford Research Computing Facility (SRCF) will undergo major power maintenance over the Labor Day week-end (Sep. 1-3, 2018). Because it's hosted in that datacenter, Sherlock will not be available for login...

Sherlock now welcomes lab-contributed software

by Kilian Cavalotti
Have you ever spent hours compiling and tuning software, put together a complex workflow combining multiple software parts, or just installed the latest version of the brand new software tools you're developing on Sherlock? And wondered...
Software
Announce
New

MySQL on Sherlock

by Kilian Cavalotti
Have you ever wondered how you could use a database server on Sherlock? Or wanted to run jobs that query data from a SQL database? Or even better, multiple jobs that would interact with the same database? Have you ever wanted to store...
Improvement
Software
Documentation

SRCF Reboot

by Kilian Cavalotti
A shutdown of the Stanford Research Computing Facility (SRCF) is planned for Labor Day weekend, Saturday through Monday, September 1-3, due to the need for power system maintenance. We will bring Sherlock down on Friday evening, August...
Announce
Maintenance

Spark on Sherlock

by Kilian Cavalotti
Apache Spark is now available on Sherlock, via the spark module: $ ml spark We also added some new documentation and example job scripts, so if you ever needed to run Spark jobs on Sherlock, please take a look at those and let us know...
Improvement
Documentation
Software

Tensorflow 1.7.0 now available

by Sherlock Team
Tensorflow 1.7.0, which features TensorRT integration, is now available on Sherlock 2.0. You can load it on Sherlock with: $ ml py-tensorflow/1.7.0_py27 > NB: As with all the other Tensorflow modules on Sherlock, Tensorflow 1.7.0...
Software
Update

New software modules

by Sherlock Team
If you haven't checked in a while, we're continuing to add more software modules on Sherlock 2.0. Among many others, the following additions will be of particular interest to the bioinformatics and genomics communities: star cufflinks...
Software
New