Sherlock changelog

Sherlock changelog

www.sherlock.stanford.edu

Introducing Boltz-1 on Sherlock

by Kilian Cavalotti, Technical Lead & Architect, HPC
Software
We're pleased to announce the availability of Boltz-1, a new open-source molecular interactions AI model recently released by MIT.
Introducing Boltz-1 on Sherlock

Storage quota units change: TB to TiB

by Kilian Cavalotti, Technical Lead & Architect, HPC
Following in Oak footsteps, we’re excited to announce that Sherlock is adopting a new unit of measure for file system quotas. Starting today, we're transitioning from Terabytes (TB) to Tebibytes (TiB) for all storage allocations on
Improvement
Data

Sherlock goes full flash

by Stéphane Thiell & Kilian Cavalotti, Research Computing Team
Data
Hardware
Improvement
What could be more frustrating than anxiously waiting for your computing job to finish? Slow I/O that makes it take even longer is certainly high on the list. But not anymore! Fir, Sherlock’s scratch file system, has just undergone a major
Sherlock goes full flash

A new tool to help optimize job resource requirements

by Kilian Cavalotti, Technical Lead & Architect, HPC
It’s not always easy to determine the right amount of resources to request for a computing job. Making sure that the application will have enough resources to run properly, but avoiding over-requests that would make the jobs spend too much
Documentation
Scheduler
Improvement

ClusterShell on Sherlock

by Kilian Cavalotti, Technical Lead & Architect, HPC
Software
New
Ever wondered how your jobs were doing while they were running? Keeping a eye on a log file is nice, but what if you could quickly gather process lists, usage metrics and other data points from all the nodes your multi-node jobs are running
ClusterShell on Sherlock

Job #1, again!

by Kilian Cavalotti, Technical Lead & Architect, HPC
This is not the first time, we’ve been through this already (not so long ago, actually) but today, the Slurm job id counter was reset and went from job #67043327 back to job #1.
Event
Scheduler

Keep up to date with software updates

by Kilian Cavalotti, Technical Lead & Architect, HPC
To help users stay on top of software changes on Sherlock, we’ve recently introduced a new software updates RSS feed. It’s available from the Sherlock software list page, and you can directly add it to your RSS reader of choice. And if
Software
Update

A new interactive step in Slurm

by Kilian Cavalotti, Technical Lead & Architect, HPC
A new version of the sh_dev tool has been released, that leverages a recently-added Slurm feature. Slurm 20.11 introduced a new“interactive step”, designed to be used with salloc to automatically launch a terminal on an allocated compute
Improvement
Scheduler

Tracking NFS problems down to the SFP level

by Kilian Cavalotti
Blog
Data
Hardware
When NFS problems turn out to be... not NFS problems at all.
Tracking NFS problems down to the SFP level