Sherlock changelog

Sherlock now welcomes lab-contributed software

by Kilian Cavalotti
Have you ever spent hours compiling and tuning software, put together a complex workflow combining multiple software parts, or just installed the latest version of the brand new software tools you're developing on Sherlock? And wondered...
Software
Announce
New

MySQL on Sherlock

by Kilian Cavalotti
Have you ever wondered how you could use a database server on Sherlock? Or wanted to run jobs that query data from a SQL database? Or even better, multiple jobs that would interact with the same database? Have you ever wanted to store...
Improvement
Software
Documentation

SRCF Reboot

by Kilian Cavalotti
A shutdown of the Stanford Research Computing Facility (SRCF) is planned for Labor Day weekend, Saturday through Monday, September 1-3, due to the need for power system maintenance. We will bring Sherlock down on Friday evening, August...
Announce
Maintenance

Spark on Sherlock

by Kilian Cavalotti
Apache Spark is now available on Sherlock, via the spark module: $ ml spark We also added some new documentation and example job scripts, so if you ever needed to run Spark jobs on Sherlock, please take a look at those and let us know...
Improvement
Documentation
Software

Tensorflow 1.7.0 now available

by Sherlock Team
Tensorflow 1.7.0, which features TensorRT integration, is now available on Sherlock 2.0. You can load it on Sherlock with: $ ml py-tensorflow/1.7.0_py27 > NB: As with all the other Tensorflow modules on Sherlock, Tensorflow 1.7.0...
Software
Update

New software modules

by Sherlock Team
If you haven't checked in a while, we're continuing to add more software modules on Sherlock 2.0. Among many others, the following additions will be of particular interest to the bioinformatics and genomics communities: star cufflinks...
Software
New

Next scheduled maintenance: Jan. 31

by Sherlock Team
Sherlock 2.0 will not be available on Wednesday, January 31st, 2018 from 8:00am to 2:00pm System maintenance and upgrades will be performed during this time. Access to Sherlock 2.0 will be unavailable, logins will be disabled and jobs...
Maintenance

Next scheduled maintenance: Dec. 12

by Sherlock Team
Sherlock 2.0 will not be available on Tuesday, December 12th, 2017 from 8:00am to 2:00pm System maintenance and upgrades will be performed during this time. Access to Sherlock 2.0 will be unavailable, logins will be disabled and jobs...
Maintenance

Next scheduled maintenance: Sept. 20

by Sherlock Team
Sherlock will not be available on Wednesday, September 20 2017 between 9:00 am and 2:00 pm. System maintenance and upgrades will be performed during this time. Access to Sherlock will be unavailable, logins will be disabled and jobs won...
Maintenance