Sherlock changelog

Sherlock now welcomes lab-contributed software

by Kilian Cavalotti
Have you ever spent hours compiling and tuning software, put together a complex workflow combining multiple software parts, or just installed the latest version of the brand new software tools you're developing on Sherlock? And wondered...
Software
Announce
New

MySQL on Sherlock

by Kilian Cavalotti
Have you ever wondered how you could use a database server on Sherlock? Or wanted to run jobs that query data from a SQL database? Or even better, multiple jobs that would interact with the same database? Have you ever wanted to store...
Improvement
Software
Documentation

Spark on Sherlock

by Kilian Cavalotti
Apache Spark is now available on Sherlock, via the spark module: $ ml spark We also added some new documentation and example job scripts, so if you ever needed to run Spark jobs on Sherlock, please take a look at those and let us know...
Improvement
Documentation
Software

Tensorflow 1.7.0 now available

by Sherlock Team
Tensorflow 1.7.0, which features TensorRT integration, is now available on Sherlock 2.0. You can load it on Sherlock with: $ ml py-tensorflow/1.7.0_py27 > NB: As with all the other Tensorflow modules on Sherlock, Tensorflow 1.7.0...
Software
Update

New software modules

by Sherlock Team
If you haven't checked in a while, we're continuing to add more software modules on Sherlock 2.0. Among many others, the following additions will be of particular interest to the bioinformatics and genomics communities: star cufflinks...
Software
New

GPU compute modes

by Sherlock Team
We developed a new extension to allow users to change the compute mode of the GPUs allocated to their jobs. By default, GPUs are set in the "Exclusive Process" mode for best performance and ensure that only one process can use the GPU...
Improvement
New

New login nodes

by Sherlock Team
Two new login nodes, sh-ln03 and sh-ln04 are now available to connect to Sherlock 2.0. They've been added to the load-balanced DNS pool and will automatically be selected according to their load and the number of currently logged-in...
Improvement
Hardware
New

RSS feed

by Sherlock Team
To make it even easier to follow news and updates, the Sherlock Changelog now supports RSS feeds! Just add the following URL to your favorite RSS reader: > https://news.sherlock.stanford.edu/feeds and be sure to never miss an update...
Improvement
Announce

Cron jobs on Sherlock

by Sherlock Team
Cron jobs are not supported on Sherlock, and going forward they won't be allowed anymore. Due to various past incidents, we had to disable the functionality, to prevent runaway cron jobs to take out entire login nodes. Moreover, compute...
Improvement